ALL LECTURES

  1. Introduction
  2. Molecular Architecture I
  3. Molecular Architecture II
  4. Bioinformatics I

CONCEPTS IN THIS LECTURE

Bioinformatics I

  1. Data in Biology
  2. Statistics of Comparison
  3. Data Visualization
  4. Databases
  5. Web Resources
  6. Sequence Comparison

6. Bioinformatics I

6.1. Data in Biology

6.2. Statistics of Comparison

  1. SB228 Lecture 6 Lecture6
  2. Bioinformatics I
  3. Data in Biology. Concept 6.1
  4. Data in Biology
  5. Strings
  6. Human Genome
  7. Relationships
  8. Multiple Sequence alignments
  9. 3-D Data
  10. Sequence Objects
  11. Structure Objects
  1. Statistics of Comparison. Concept 6.2
  2. Statistics is Important in Bioinformatics
  3. Mean
  4. Standard Deviation
  5. Uniform Distribution
  6. Binomial Distribution
  7. Normal Distribution
  8. Extreme Value Distributions
  9. Expectation Values1
  10. Expectation Values2

6.3. Data Visualization

6.4. Databases

  1. Data Visualization. Concept 6.3
  2. Data Visualization
  3. Intuitive Clustering
  4. Hierarchical Clustering
  5. K-Means Clustering
  6. Roc analysis
  7. True or False
  8. Roc Curve Examples
  9. Views of Structure Space1
  10. Views of Structure Space2
  1. Databases. Concept 6.4
  2. Databases
  3. Protein Database RCSB
  4. Protein Database PDBLITE
  5. RNA Structure Database
  6. Membrane Protein Data Base
  7. Organic Molecule Structures
  8. Small Molecule Database
  9. Pathway Databases1
  10. Pathway Databases2

6.5. Web Resources

6.6. Sequence Comparison

  1. Web Resources. Concept 6.5
  2. Web Resources
  3. Ensembl EBI Sanger Genome Viewer1
  4. Ensembl EBI Sanger Genome Viewer2
  5. NCBI Genome Viewer1
  6. NCBI Genome Viewer2
  7. NCBI is the Place for Sequence
  8. EBI is the Place for tools
  1. Sequence Comparison. Concept 6.6
  2. Sequence Comparison
  3. Identical Comparison
  4. Identical Trace
  5. Mismatch Comparison
  6. Mismatch Trace2
  7. Deletion Comparison
  8. Deletion Trace
  9. Deletion-Insertion Comparison
  10. Deletion-Insertion Trace
  11. Scoring Matrix
  12. Gap Penalties
  13. Dynamic Programming
  14. Dynamic Programming1
  15. Dynamic Programming2
  16. Advanced Methods
  17. FASTA
  18. Blast and Psi-Blast
  19. Blast Compare Sequences